BIO/CSC 295 2009F Bioinformatics

Class 13: Sequence Assembly (2)

Back to Sequence Assembly (1). On to Gene Prediction (1).

This outline is also available in PDF.

Held: Thursday, 8 October 2009

Summary: We continue our exploration of how DNA sequence databases are created.

Related Pages:

Notes:

Overview:

Sequencing DNA

CS Detour: Assessing the Complexity of Algorithms

The Traveling Salescritter Problem

NP Completeness

Reassembling Shotgun Sequences

Testing Assembly Algorithms

Back to Sequence Assembly (1). On to Gene Prediction (1).

Disclaimer: I usually create these pages on the fly, which means that I rarely proofread them and they may contain bad grammar and incorrect details. It also means that I tend to update them regularly (see the history for more details). Feel free to contact me with any suggestions for changes.

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Samuel A. Rebelsky, rebelsky@grinnell.edu

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